Supplementary datafiles of: "Family dinner: transcriptional plasticity of five Noctuidae (Lepidoptera) feeding on three host plant species"

Supplementary File 1 (Host families tree)

Navaud, Olivier
Barbacci, Adelin
Taylor, Andrew
Clarkson, John P.
Raffaele, Sylvain

February 2018

Phylogenetic tree of host plant families used for co-phylogenetic analyses in this work (newick form...

Host-use data and phylogenies for plant-feeding Hemiptera and Lepidoptera

Daniel A. Peterson (146145)
Nate B. Hardy (3241494)
Benjamin B. Normark (3241497)

October 2016

We have included host-use information (in link form) for plant-feeding Hemiptera and Lepidoptera. Th...

Additional file 1: of Transcriptomic response of female adult moths to host and non-host plants in two closely related species

M. Orsucci (5118560)
P. Audiot (5118542)
S. Nidelet (5776439)
F. Dorkeld (5118563)
A. Pommier (5118557)
M. Vabre (5118554)
D. Severac (5118545)
M. Rohmer (5776448)
B. Gschloessl (5118551)
R. Streiff (5118548)

September 2018

Box S1. Experimental framework of RNAseq sequencing: material, methods and main results on the behav...

Supplementary datafiles of: "Family dinner: transcriptional plasticity of five Noctuidae (Lepidoptera) feeding on three host plant species"

Thijmen Breeschoten (13154604)
M. Eric Schranz (7330298)
Erik H. Poelman (297236)
Sabrina Simon (159295)

September 2022

This dataset contains all supplementary datafiles of the manuscript: “Family dinner: Transcriptional...

Supplementary datafiles of - "Expanding the Menu: Are Polyphagy and Gene Family Expansions Linked Across Lepidoptera?

Breeschoten, Thijmen
Simon, Sabrina
Schranz, Eric
van der Linden, Corné
Ros, Vera

January 2022

This dataset contains all supplementary datafiles for paper entitled: Expanding the Menu: Are Polyph...

Supplementary datafiles of - "Genome and transcriptome analysis of the beet armyworm Spodoptera exigua reveals targets for pest control"

Breeschoten, Thijmen
Simon, Sabrina
Jansen, Hans
Dirks, Ron
Schranz, Eric
Ros, Vera

January 2022

This dataset contains all supplementary datafiles paper entitled: “Genome and transcriptome analysis...

Family dinner: Transcriptional plasticity of five Noctuidae (Lepidoptera) feeding on three host plant species

Breeschoten, Thijmen
Schranz, M.E.
Poelman, Erik H.
Simon, Sabrina

January 2022

Polyphagous insects often show specialization in feeding on different host plants in terms of surviv...

Additional file 4: of Larval transcriptomic response to host plants in two related phytophagous lepidopteran species: implications for host specialization and species divergence

M. Orsucci (5118560)
P. Audiot (5118542)
F. Dorkeld (5118563)
A. Pommier (5118557)
M. Vabre (5118554)
B. Gschloessl (5118551)
S. Rialle (3768544)
D. Severac (5118545)
D. Bourguet (5118539)
R. Streiff (5118548)

April 2018

Table S6. Detailed information for DE genes displaying significant homology to genes described in vi...

Additional file 3: of Evolutionary history of host use, rather than plant phylogeny, determines gene expression in a generalist butterfly

Maria Celorio-Mancera (3402275)
Christopher Wheat (3295143)
Mikael Huss (377397)
Francesco Vezzi (107361)
Ramprasad Neethiraj (383691)
Johan Reimegård (110489)
Sören Nylin (148408)
Niklas Janz (148395)

March 2016

Is a table listing the transcripts under the “oxidoreductase” GO category in the fat body of caterpi...

Additional file 3: of Larval transcriptomic response to host plants in two related phytophagous lepidopteran species: implications for host specialization and species divergence

M. Orsucci (5118560)
P. Audiot (5118542)
F. Dorkeld (5118563)
A. Pommier (5118557)
M. Vabre (5118554)
B. Gschloessl (5118551)
S. Rialle (3768544)
D. Severac (5118545)
D. Bourguet (5118539)
R. Streiff (5118548)

April 2018

Table S4. Detailed information for all DE genes: mean normalized counts per experimental set-up, sig...

Phylogenomics Resolves The Timing And Pattern Of Insect Evolution: Supplementary File Archives.

Bernhard Misof (153798)
Shanlin Liu (2851853)
Karen Meusemann (216039)
Ralph S. Peters (153790)
Alexander Donath (3318930)
Christoph Mayer (57204)
Paul B. Frandsen (3318969)
Jessica Ware (818040)
Tomas Flouri (3201012)
Rolf G. Beutel (3318954)
Oliver Niehuis (153801)
Malte Petersen (3183417)
Fernando Izquierdo-Carrasco (3318951)
Torsten Wappler (150884)
Jes Rust (150893)
Andre J. Aberer (3266361)
Ulrike Aspöck (162539)
Horst Aspöck (162532)
Daniela Bartel (532190)
Alexander Blanke (3137607)
Simon Berger (1321149)
Alexander Böhm (3318927)
Thomas Buckley (344503)
Brett Calcott (376631)
Junqing Chen (84035)
Frank Friedrich (98771)
Makiko Fukui (3318909)
Mari Fujita (397912)
Carola Greve (172813)
Peter Grobe (377392)
Shengchang Gu (3318933)
Ying Huang (53474)
Lars S. Jermiin (153781)
Akito Y. Kawahara (263501)
Lars Krogmann (3277686)
Martin Kubiak (3318957)
Robert Lanfear (395145)
Harald Letsch (3296787)
Yiyuan Li (3245487)
Zhenyu Li (295387)
Jiguang Li (3318924)
Haorong Lu (3318900)
Ryuichiro Machida (524093)
Yuta Mashimo (3318939)
Pashalia Kapli (3313107)
Duane D. McKenna (244919)
Guanliang Meng (3252522)
Yasutaka Nakagaki (3318963)
José Luis Navarrete-Heredia (3318897)
Michael Ott (191936)
Yanxiang Ou (3318912)
Günther Pass (532195)
Lars Podsiadlowski (21724)
Hans Pohl (292246)
Björn M von Reumont (3318915)
Kai Schütte (3318972)
Kaoru Sekiya (3318903)
Shota Shimizu (821464)
Adam Slipinski (3318945)
Alexandros Stamatakis (84055)
Wenhui Song (3318960)
Xu Su (688635)
Nikolaus U. Szucsich (532191)
Meihua Tan (296737)
Xuemei Tan (723836)
Min Tang (142347)
Jingbo Tang (3318921)
Gerald Timelthaler (532192)
Shigekazu Tomizuka (524092)
Michelle Trautwein (622371)
Xiaoli Tong (3318906)
Toshiki Uchifune (3318981)
Manfred G. Walzl (3318966)
Brian M. Wiegmann (3265674)
Jeanne Wilbrandt (3318942)
Benjamin Wipfler (98770)
Thomas KF Wong (3318918)
Qiong Wu (84327)
Gengxiong Wu (3318948)
Yinlong Xie (3318975)
Shenzhou Yang (3252513)
Qing Yang (67856)
David K. Yeates (3265707)
Kazunori Yoshizawa (161242)
Qing Zhang (1802)
Rui Zhang (13940)
Wenwei Zhang (165134)
Yunhui Zhang (65111)
Jing Zhao (21160)
Chengran Zhou (442123)
Lili Zhou (265076)
Tanja Ziesmann (3318936)
Shijie Zou (3318978)
Yingrui Li (149030)
Xun Xu (276108)
Yong Zhang (5893)
Huanming Yang (5905)
Jian Wang (5901)
Jun Wang (5906)
Karl M. Kjer (3276648)
Xin Zhou (54275)

November 2016

Phylogenomics Resolves The Timing And Pattern Of Insect Evolution: Supplementary File Archives. This...

Additional file 5: of Larval transcriptomic response to host plants in two related phytophagous lepidopteran species: implications for host specialization and species divergence

M. Orsucci (5118560)
P. Audiot (5118542)
F. Dorkeld (5118563)
A. Pommier (5118557)
M. Vabre (5118554)
B. Gschloessl (5118551)
S. Rialle (3768544)
D. Severac (5118545)
D. Bourguet (5118539)
R. Streiff (5118548)

April 2018

Table S7. Detailed information for DE genes displaying significant sequence similarity to genes prev...

Additional file 2: of Larval transcriptomic response to host plants in two related phytophagous lepidopteran species: implications for host specialization and species divergence

M. Orsucci (5118560)
P. Audiot (5118542)
F. Dorkeld (5118563)
A. Pommier (5118557)
M. Vabre (5118554)
B. Gschloessl (5118551)
S. Rialle (3768544)
D. Severac (5118545)
D. Bourguet (5118539)
R. Streiff (5118548)

April 2018

Table S3. Common and private DE genes in analyses with and without the inclusion of the one outlier ...

Dataset for the manuscript: Phylogenetic and functional constraints of plant facilitation rewiring. ECOLOGY

Sánchez Martín, Ricardo
Verdú, Miguel
Montesinos-Navarro, Alicia

August 2022

The following directory contains the data necessary to replicate the results obtained in the manusc...

Additional file 6: of Evolutionary history of host use, rather than plant phylogeny, determines gene expression in a generalist butterfly

Maria Celorio-Mancera (3402275)
Christopher Wheat (3295143)
Mikael Huss (377397)
Francesco Vezzi (107361)
Ramprasad Neethiraj (383691)
Johan ReimegĂĽrd (3402281)
SĂśren Nylin (3402278)
Niklas Janz (148395)

March 2016

Provides the methodology for sequencing of RNA and gene annotation and enrichment of the transcripti...

Supplementary File 1 (Host families tree)

Navaud, Olivier
Barbacci, Adelin
Taylor, Andrew
Clarkson, John P.
Raffaele, Sylvain

February 2018

Phylogenetic tree of host plant families used for co-phylogenetic analyses in this work (newick form...

Host-use data and phylogenies for plant-feeding Hemiptera and Lepidoptera

Daniel A. Peterson (146145)
Nate B. Hardy (3241494)
Benjamin B. Normark (3241497)

October 2016

We have included host-use information (in link form) for plant-feeding Hemiptera and Lepidoptera. Th...

Additional file 1: of Transcriptomic response of female adult moths to host and non-host plants in two closely related species

M. Orsucci (5118560)
P. Audiot (5118542)
S. Nidelet (5776439)
F. Dorkeld (5118563)
A. Pommier (5118557)
M. Vabre (5118554)
D. Severac (5118545)
M. Rohmer (5776448)
B. Gschloessl (5118551)
R. Streiff (5118548)

September 2018

Box S1. Experimental framework of RNAseq sequencing: material, methods and main results on the behav...

Supplementary datafiles of: "Family dinner: transcriptional plasticity of five Noctuidae (Lepidoptera) feeding on three host plant species"

Thijmen Breeschoten (13154604)
M. Eric Schranz (7330298)
Erik H. Poelman (297236)
Sabrina Simon (159295)

September 2022

This dataset contains all supplementary datafiles of the manuscript: “Family dinner: Transcriptional...

Supplementary datafiles of - "Expanding the Menu: Are Polyphagy and Gene Family Expansions Linked Across Lepidoptera?

Breeschoten, Thijmen
Simon, Sabrina
Schranz, Eric
van der Linden, Corné
Ros, Vera

January 2022

This dataset contains all supplementary datafiles for paper entitled: Expanding the Menu: Are Polyph...

Supplementary datafiles of - "Genome and transcriptome analysis of the beet armyworm Spodoptera exigua reveals targets for pest control"

Breeschoten, Thijmen
Simon, Sabrina
Jansen, Hans
Dirks, Ron
Schranz, Eric
Ros, Vera

January 2022

This dataset contains all supplementary datafiles paper entitled: “Genome and transcriptome analysis...

Family dinner: Transcriptional plasticity of five Noctuidae (Lepidoptera) feeding on three host plant species

Breeschoten, Thijmen
Schranz, M.E.
Poelman, Erik H.
Simon, Sabrina

January 2022

Polyphagous insects often show specialization in feeding on different host plants in terms of surviv...

Additional file 4: of Larval transcriptomic response to host plants in two related phytophagous lepidopteran species: implications for host specialization and species divergence

M. Orsucci (5118560)
P. Audiot (5118542)
F. Dorkeld (5118563)
A. Pommier (5118557)
M. Vabre (5118554)
B. Gschloessl (5118551)
S. Rialle (3768544)
D. Severac (5118545)
D. Bourguet (5118539)
R. Streiff (5118548)

April 2018

Table S6. Detailed information for DE genes displaying significant homology to genes described in vi...

Additional file 3: of Evolutionary history of host use, rather than plant phylogeny, determines gene expression in a generalist butterfly

Maria Celorio-Mancera (3402275)
Christopher Wheat (3295143)
Mikael Huss (377397)
Francesco Vezzi (107361)
Ramprasad Neethiraj (383691)
Johan Reimegård (110489)
Sören Nylin (148408)
Niklas Janz (148395)

March 2016

Is a table listing the transcripts under the “oxidoreductase” GO category in the fat body of caterpi...

Additional file 3: of Larval transcriptomic response to host plants in two related phytophagous lepidopteran species: implications for host specialization and species divergence

M. Orsucci (5118560)
P. Audiot (5118542)
F. Dorkeld (5118563)
A. Pommier (5118557)
M. Vabre (5118554)
B. Gschloessl (5118551)
S. Rialle (3768544)
D. Severac (5118545)
D. Bourguet (5118539)
R. Streiff (5118548)

April 2018

Table S4. Detailed information for all DE genes: mean normalized counts per experimental set-up, sig...

Phylogenomics Resolves The Timing And Pattern Of Insect Evolution: Supplementary File Archives.

Bernhard Misof (153798)
Shanlin Liu (2851853)
Karen Meusemann (216039)
Ralph S. Peters (153790)
Alexander Donath (3318930)
Christoph Mayer (57204)
Paul B. Frandsen (3318969)
Jessica Ware (818040)
Tomas Flouri (3201012)
Rolf G. Beutel (3318954)
Oliver Niehuis (153801)
Malte Petersen (3183417)
Fernando Izquierdo-Carrasco (3318951)
Torsten Wappler (150884)
Jes Rust (150893)
Andre J. Aberer (3266361)
Ulrike Aspöck (162539)
Horst Aspöck (162532)
Daniela Bartel (532190)
Alexander Blanke (3137607)
Simon Berger (1321149)
Alexander Böhm (3318927)
Thomas Buckley (344503)
Brett Calcott (376631)
Junqing Chen (84035)
Frank Friedrich (98771)
Makiko Fukui (3318909)
Mari Fujita (397912)
Carola Greve (172813)
Peter Grobe (377392)
Shengchang Gu (3318933)
Ying Huang (53474)
Lars S. Jermiin (153781)
Akito Y. Kawahara (263501)
Lars Krogmann (3277686)
Martin Kubiak (3318957)
Robert Lanfear (395145)
Harald Letsch (3296787)
Yiyuan Li (3245487)
Zhenyu Li (295387)
Jiguang Li (3318924)
Haorong Lu (3318900)
Ryuichiro Machida (524093)
Yuta Mashimo (3318939)
Pashalia Kapli (3313107)
Duane D. McKenna (244919)
Guanliang Meng (3252522)
Yasutaka Nakagaki (3318963)
José Luis Navarrete-Heredia (3318897)
Michael Ott (191936)
Yanxiang Ou (3318912)
Günther Pass (532195)
Lars Podsiadlowski (21724)
Hans Pohl (292246)
Björn M von Reumont (3318915)
Kai Schütte (3318972)
Kaoru Sekiya (3318903)
Shota Shimizu (821464)
Adam Slipinski (3318945)
Alexandros Stamatakis (84055)
Wenhui Song (3318960)
Xu Su (688635)
Nikolaus U. Szucsich (532191)
Meihua Tan (296737)
Xuemei Tan (723836)
Min Tang (142347)
Jingbo Tang (3318921)
Gerald Timelthaler (532192)
Shigekazu Tomizuka (524092)
Michelle Trautwein (622371)
Xiaoli Tong (3318906)
Toshiki Uchifune (3318981)
Manfred G. Walzl (3318966)
Brian M. Wiegmann (3265674)
Jeanne Wilbrandt (3318942)
Benjamin Wipfler (98770)
Thomas KF Wong (3318918)
Qiong Wu (84327)
Gengxiong Wu (3318948)
Yinlong Xie (3318975)
Shenzhou Yang (3252513)
Qing Yang (67856)
David K. Yeates (3265707)
Kazunori Yoshizawa (161242)
Qing Zhang (1802)
Rui Zhang (13940)
Wenwei Zhang (165134)
Yunhui Zhang (65111)
Jing Zhao (21160)
Chengran Zhou (442123)
Lili Zhou (265076)
Tanja Ziesmann (3318936)
Shijie Zou (3318978)
Yingrui Li (149030)
Xun Xu (276108)
Yong Zhang (5893)
Huanming Yang (5905)
Jian Wang (5901)
Jun Wang (5906)
Karl M. Kjer (3276648)
Xin Zhou (54275)

November 2016

Phylogenomics Resolves The Timing And Pattern Of Insect Evolution: Supplementary File Archives. This...

Additional file 5: of Larval transcriptomic response to host plants in two related phytophagous lepidopteran species: implications for host specialization and species divergence

M. Orsucci (5118560)
P. Audiot (5118542)
F. Dorkeld (5118563)
A. Pommier (5118557)
M. Vabre (5118554)
B. Gschloessl (5118551)
S. Rialle (3768544)
D. Severac (5118545)
D. Bourguet (5118539)
R. Streiff (5118548)

April 2018

Table S7. Detailed information for DE genes displaying significant sequence similarity to genes prev...

Additional file 2: of Larval transcriptomic response to host plants in two related phytophagous lepidopteran species: implications for host specialization and species divergence

M. Orsucci (5118560)
P. Audiot (5118542)
F. Dorkeld (5118563)
A. Pommier (5118557)
M. Vabre (5118554)
B. Gschloessl (5118551)
S. Rialle (3768544)
D. Severac (5118545)
D. Bourguet (5118539)
R. Streiff (5118548)

April 2018

Table S3. Common and private DE genes in analyses with and without the inclusion of the one outlier ...

Dataset for the manuscript: Phylogenetic and functional constraints of plant facilitation rewiring. ECOLOGY

Sánchez Martín, Ricardo
Verdú, Miguel
Montesinos-Navarro, Alicia

August 2022

The following directory contains the data necessary to replicate the results obtained in the manusc...

Additional file 6: of Evolutionary history of host use, rather than plant phylogeny, determines gene expression in a generalist butterfly

Maria Celorio-Mancera (3402275)
Christopher Wheat (3295143)
Mikael Huss (377397)
Francesco Vezzi (107361)
Ramprasad Neethiraj (383691)
Johan ReimegĂĽrd (3402281)
SĂśren Nylin (3402278)
Niklas Janz (148395)

March 2016

Provides the methodology for sequencing of RNA and gene annotation and enrichment of the transcripti...

Supplementary File 1 (Host families tree)

Navaud, Olivier
Barbacci, Adelin
Taylor, Andrew
Clarkson, John P.
Raffaele, Sylvain

February 2018

Phylogenetic tree of host plant families used for co-phylogenetic analyses in this work (newick form...

Host-use data and phylogenies for plant-feeding Hemiptera and Lepidoptera

Daniel A. Peterson (146145)
Nate B. Hardy (3241494)
Benjamin B. Normark (3241497)

October 2016

We have included host-use information (in link form) for plant-feeding Hemiptera and Lepidoptera. Th...

Additional file 1: of Transcriptomic response of female adult moths to host and non-host plants in two closely related species

M. Orsucci (5118560)
P. Audiot (5118542)
S. Nidelet (5776439)
F. Dorkeld (5118563)
A. Pommier (5118557)
M. Vabre (5118554)
D. Severac (5118545)
M. Rohmer (5776448)
B. Gschloessl (5118551)
R. Streiff (5118548)

September 2018

Box S1. Experimental framework of RNAseq sequencing: material, methods and main results on the behav...

Supplementary datafiles of: "Family dinner: transcriptional plasticity of five Noctuidae (Lepidoptera) feeding on three host plant species"

Abstract

Extracted data

Supplementary datafiles of: "Family dinner: transcriptional plasticity of five Noctuidae (Lepidoptera) feeding on three host plant species"

Abstract

Extracted data

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